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Genetic yield of next-generation sequencing for detecting monogenic familial hypercholesterolemia in uzbek patients with coronary artery disease.

📚 期刊: PloS one 📅 发表: 0000-00-00 🔬 PMID: 42424361 🔗 DOI: 10.1371/journal.pone.0353401 👁️ 浏览: 11

👤 作者: Alieva RB, Shek AB, Bahachova AV, Fozilov KG, Abdullaeva GJ, Abdullaev AA, Kan LE, Khoshimov SU, Kim AR, Nizamov UI

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APA Vancouver 国标 GB/T 7714 BibTeX RIS
Alieva RB, Shek AB, Bahachova AV, Fozilov KG, Abdullaeva GJ, Abdullaev AA, Kan LE, Khoshimov SU, Kim AR, Nizamov UI (0000). Genetic yield of next-generation sequencing for detecting monogenic familial hypercholesterolemia in uzbek patients with coronary artery disease.. PloS one. https://doi.org/10.1371/journal.pone.0353401

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BACKGROUND: Familial hypercholesterolaemia (FH) is an inherited disorder with markedly elevated LDL-C and increased risk of premature atherosclerotic cardiovascular disease, most often caused by pathogenic variants in LDLR and less frequently APOB/PCSK9 (or recessive LDLRAP1). FH is commonly assessed using the Dutch Lipid Clinic Network (DLCN) score (definite >8, probable 6-8, possible 3-5). In Uzbekistan, genetic evidence for FH remains limited and largely based on candidate-variant studies, and the diagnostic yield of NGS for monogenic FH in CAD patients is not well defined. AIM: For the first time in Uzbekistan and Central Asia, to investigate FH-associated monogenic variants using next-generation sequencing (NGS) and to assess the validity of the DLCN criteria against genetic testing as the diagnostic reference standard in Uzbek patients with CAD and suspected FH. METHODS: This study included 95 patients with coronary artery disease (CAD) who underwent targeted NGS of LDLR, APOB, PCSK9, and LDLRAP1. The suspected/phenotypic FH group comprised 56 patients: 53 with DLCN-predicted heterozygous FH (HeFH)-possible (3-5 points, n = 22), probable (6-8 points, n = 16), and definite (>8 points, n = 15)-and 3 siblings from one family with a homozygous FH (HoFH) phenotype. The control group included 39 CAD patients with hypercholesterolemia without an FH diagnosis (DLCN 1-2 points). Only pathogenic/likely pathogenic (P/LP) variants were used for genetic confirmation of FH. RESULTS: Pathogenic/likely pathogenic variants were detected in 10/53 (18.9%) DLCN-predicted HeFH patients and in all three HoFH siblings. Genetic confirmation rates (PPV) were 46.7% (7/15) in definite HeFH, 12.5% (2/16) in probable HeFH, and 4.5% (1/22) in possible HeFH; no P/LP variants were detected in controls (0/39). Using a DLCN >8 threshold, sensitivity was 70.0% (7/10) and specificity was 90.2% (74/82) in the CAD cohort excluding the HoFH family. CONCLUSION: NGS confirmed the highest diagnostic yield in patients with DLCN >8, supporting its use as a practical threshold to prioritise genetic testing; however, monogenic FH may still be present in patients with probable or possible DLCN scores.

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